rs30226585 SNP Detail

Summary

• ID
  rs30226585
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:33960493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAAAGCT ACCCACTATT
  ATGAAGCTAA GCAAACAAAA GACCGAGATT AGCTTGTCCA CGTAAGGAGT CTGGGGCTAA
  CGAGGACACA CATGCAGCAT GACCATCTGA GAGGTGGGAT CCGTCTGCCT TCTTCTGGCC
  CTGACTGGCC CTGGCATCAC AGTTGAAGAT CTTAAAAAAT CCAGTCATAA ATTCATTTCA
  M
  TGCATGGAGC TACACACTTC TTTGTTTCTT TTTAACTATG ATGAGACTAG AATCCTGTAT
  CTTTGCTGAC CAATTAGGAA TTTAGGCTAA AGAGATCAGG TGCTTACTTT ATTCATGTAT
  GAGACAGATG TAGTGAGCTC TCACCTTCTA ACTTATGTAA GCTTGTATGT CTCACTCAAA
  CTCAACTTCC CACTTTTATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	MOLF/EiJ
ss39163996	mCV24440579	ABI	CRAMUS_MOUSE	f	SNP		C					A	A
ss62244534	NES17198627	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	A			C
ss139267701	ENSMUSSNP1790115	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	MOLF/EiJ
rs30226585					SNP	C	C	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62244534	NES17198627	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:33960493 () rs orientation: forward

Symbol	Name	Function Class
Shld2	shieldin complex subunit 2	within coordinates