rs30226703 SNP Detail

Summary

• ID
  rs30226703
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50798244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAAGGGGA GTTGGTCCAA
  TCATAATGTT TCCATGTTAA AGGGAGGTGC TGAGTCAGGC TGCTCCCATC ACGGGTGGGG
  ACAGTGAGCC CTTAGAGTGA CCTGCATAGG TTAGTGGCAG GTCTAGGGAC TAAGGATTGA
  GTTCAGATTT GTTGCTGCCT CCTGTGCTAT CTGACAGGAC GGAGTGGTAC TACTCACCTG
  Y
  AGTGCCTGTC TAGCTACCCA CTGGTTTGGA CTGGGGAGCC AGCCTCTCTC TTCATTTCCT
  GGTACCCTTC TGACTGCCTG CCTGCCCTTT GGCCTTCACT TTGATGAGTA AACTTCTGGG
  TTTCTGTGGT GACTTGTAGT TCCAGTGGGT CTCAGGTGAG GCACAGGCAA TGAGCTGGGT
  CCCTTGCATG GTGTGCTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46386194	mCV25209765	ABI	CRAMUS_MOUSE	f	SNP		C	T						T
ss47709482	NES11314246	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	T	T	T	T	C	T	T	T	T
ss136483598	ENSMUSSNP5940609	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30226703					SNP	C	C	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47709482	NES11314246	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50798244 () rs orientation: forward

Symbol	Name	Function Class
Gm25558	predicted gene, 25558	1008 bp upstream
Ppp2r1b	protein phosphatase 2, regulatory subunit A, beta	within coordinates
Rr195477	regulatory region 195477	1557 bp proximal
Rr209487	regulatory region 209487	within coordinates
Tssr85077	transcription start site region 85077	1446 bp downstream