rs30227099 SNP Detail

Summary

• ID
  rs30227099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:48817995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGAAGGA GGAGGCAAAT
  TCAGAATTAT TTATCTAAAT TACCAATAAG AAAAATAAGA GTTTCTGCTG GGCTCTGTGG
  ATATCTAGCT GATTGCTTCC ATGGCATCAA ATTCCTATGG AAATTGGGGG AAAATGTATG
  TAAAGTCATT CACTGGAAAT GTTAGAGAAA AATAATGCTC CATCATTCAT AAATGAAAAT
  R
  ACATTCCTGA CTCACAAGCA GTAGGATGTG CATTTAAGAG GGTTCCCCCC CCCCCCAGCA
  GCCAGGATGG GTTAGCAGTG AGTCATAGCT GTAGCTTCCC CTTGCGTACT TGCCCACCAT
  GCTCAAAGAC CCTTATTTGT GAAGTGGCTG TCTGATCACA GTGCCTGGGC TATGATAGGA
  TTACAAATTA GTCTGTGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46926370	NES10929857	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30227099					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46926370	NES10929857	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:48817995 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Or5o1	olfactory receptor family 5 subfamily N member 1			Intron
				Noncoding-Transcript-Variant