rs30227101 SNP Detail

Summary

• ID
  rs30227101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121266631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTTATTGT AAATATAAAG GTTGTGTGTG TCTTTTATCC
  GGGAACTAAA TGGTCAAAGG CTAGGTAGGA ACCCTGGGTT GGGATTAAAA TTTTCCACAG
  Y
  ACAACACAAA GCATCTCCAA TCTGTACCTG AGAACTGAGG AGATGGCCTG AGTGAGATGA
  GGACAGATGT GGGAACGGGG ACGTGTTCCC AGTGCCGTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss46926372	NES10673083	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs30227101					SNP	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46926372	NES10673083	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121266631 () rs orientation: forward

Symbol	Name	Function Class
Gm65969	predicted gene, 65969	1661 bp downstream
Rr584089	regulatory region 584089	1685 bp proximal
Slc44a3	solute carrier family 44, member 3	Intron