rs30227710 SNP Detail

Summary

• ID
  rs30227710
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:38765697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGGCCCTC TCTTTAATAC ATTTGAATGT GTTAAGGTAG
  CTGCTGAACT CTACACAGGG GAAGTATTTG TTAGGTCTTT TGTCTCCTCA ATCTCCAGGG
  S
  GACCTTGGTA AGTCCTTGTG CCTCTCTCTC CGAGCTGATG TGAGTGGTTC AGGTCCACAG
  GCTGGAACTA CTATTTTCAT GAAGTCCCCT GAGTGGCCA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39661270	mCV23939970	ABI	CRAMUS_MOUSE	f	SNP	C	G	G	C	G
ss146968986	ENSMUSSNP1328510	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss325587771	CHEV_18_38792298	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30227710					SNP	C	G	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:38765697 () rs orientation: forward

Symbol	Name	Function Class
9630014M24Rik	RIKEN cDNA 9630014M24 gene	within coordinates
Arhgap26	Rho GTPase activating protein 26	within coordinates
Cpgi9980	CpG island 9980	409 bp distal
Gm58701	predicted gene, 58701	within coordinates
Rr393575	regulatory region 393575	within coordinates
Rr536561	regulatory region 536561	within coordinates
Tssr150807	transcription start site region 150807	928 bp downstream
Tssr150808	transcription start site region 150808	182 bp downstream
Tssr153047	transcription start site region 153047	1096 bp upstream
Tssr153048	transcription start site region 153048	1064 bp upstream
Tssr153049	transcription start site region 153049	1025 bp upstream
Tssr153050	transcription start site region 153050	1898 bp downstream