rs30227782 SNP Detail

Summary

• ID
  rs30227782
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:75152945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACG ACTATCCTGC TCTGGAGTTT
  Y
  TAGATAATCT TTTTGGCTCA GAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39661570	mCV23942558	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss147488257	ENSMUSSNP6113350	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30227782					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:75152945 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10229	CpG island 10229			309 bp distal
Dym	dymeclin			Intron
				Noncoding-Transcript-Variant
Rr405742	regulatory region 405742			1119 bp downstream
Rr540715	regulatory region 540715			1068 bp distal
Rr540716	regulatory region 540716			2 bp distal
Rr540717	regulatory region 540717			1166 bp proximal
Rr540718	regulatory region 540718			1801 bp proximal
Tssr151951	transcription start site region 151951			1174 bp downstream
Tssr151952	transcription start site region 151952			1058 bp downstream
Tssr151953	transcription start site region 151953			940 bp downstream