rs30228001 SNP Detail

Summary

• ID
  rs30228001
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:48818361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT GAAGAGGTTA TAAATAATCA
  M
  ATTTTTGTTT TTGCATGTGA AATCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss46500976	mCV25124688	ABI	CRAMUS_MOUSE	f	SNP	A	C
ss46926382	NES10929862	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A		C	C
ss134168666	ENSMUSSNP7121091	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss325889995	CHEV_X_47082661	CHEVERUD	SCREENING_POP	f	SNP						A			C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs30228001					SNP	A	C	A	A	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46926382	NES10929862	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:48818361 () rs orientation: forward

Symbol	Name	Function Class
Or5o1	olfactory receptor family 5 subfamily N member 1	1552 bp upstream