rs30228341 SNP Detail

Summary

• ID
  rs30228341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92132138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCA AATAGGTTGG GTGGTTGAGA
  Y
  CAGGCAGTGT AAAGAAAGTT CCGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss46384476	mCV24280395	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss136805857	ENSMUSSNP2589945	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30228341					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92132138 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22145	CpG island 22145	126 bp proximal
Gm67683	predicted gene, 67683	within coordinates
Plscr1	phospholipid scramblase 1	127 bp upstream
Rr206878	regulatory region 206878	within coordinates
Rr383753	regulatory region 383753	within coordinates
Tssr86494	transcription start site region 86494	418 bp downstream
Tssr86495	transcription start site region 86495	396 bp downstream
Tssr86496	transcription start site region 86496	356 bp downstream
Tssr86497	transcription start site region 86497	332 bp downstream
Tssr86498	transcription start site region 86498	51 bp downstream
Tssr86499	transcription start site region 86499	25 bp downstream
Tssr86500	transcription start site region 86500	17 bp downstream
Tssr86501	transcription start site region 86501	within coordinates
Tssr86502	transcription start site region 86502	39 bp upstream
Tssr86503	transcription start site region 86503	80 bp upstream
Tssr86504	transcription start site region 86504	110 bp upstream
Tssr86505	transcription start site region 86505	211 bp upstream
Tssr90887	transcription start site region 90887	387 bp downstream
Tssr90888	transcription start site region 90888	425 bp downstream