rs30228525 SNP Detail

Summary

• ID
  rs30228525
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122343179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGACCTAC AGAGTGGCCT
  AGCGTGGTAG GTAGGAGCCT AGAGACCACC AAAAGAACTC AGTGGCACAG CGAGCAGCAT
  GCCAGCTATG GACAGTGAGA TTGTCACAGG TAGAAAAAAG TAGTAATGGC AAGGTTGGAG
  CGGGAGCTAC GGCAGTGAAG GTCTAGTTTG GTATTATCAG AAAAATAGGT AAGGTGTGTG
  K
  GGGGTGTTAA TCCTACCTCT TTATATTTGG AGACAGCTGC TTCCTTTTTC GACAAAGGGC
  GTTGTCTTGA CTTAGCCCAA AGTTCAGTAT GTGCATGTAT TTGAGATGGT GTGCGCTGAT
  GGACACGCCT CCTTTTGTTA TAAAAGTGGT CAGGACCGCC TGGGACAACT ACTATATCAC
  CTATTTTTTT GTGATATAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39164216	mCV22559885	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	G
ss147010812	ENSMUSSNP1543755	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		G
ss324857942	CHEV_14_122504989	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30228525					SNP	G	T	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122343179 () rs orientation: forward

Symbol	Name	Function Class
A330035P11Rik	RIKEN cDNA A330035P11 gene	within coordinates
Cpgi6887	CpG island 6887	267 bp distal
Cpgi6888	CpG island 6888	979 bp proximal
Gm56752	predicted gene, 56752	within coordinates
Rr296792	regulatory region 296792	within coordinates
Rr404313	regulatory region 404313	676 bp downstream
Tm9sf2	transmembrane 9 superfamily member 2	1271 bp upstream
Tssr127313	transcription start site region 127313	737 bp downstream
Tssr127314	transcription start site region 127314	624 bp downstream
Tssr127315	transcription start site region 127315	1262 bp upstream
Tssr127316	transcription start site region 127316	1298 bp upstream
Tssr127317	transcription start site region 127317	1309 bp upstream
Tssr127318	transcription start site region 127318	1352 bp upstream
Tssr130316	transcription start site region 130316	67 bp downstream
Tssr130317	transcription start site region 130317	1149 bp downstream
Tssr130318	transcription start site region 130318	1173 bp downstream