rs3022857 SNP Detail

Summary

• ID
  rs3022857
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170794050 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGCAA AGGAAGTCTA GGAAGGACAC
  W
  GCACCAGTCC AAGCCTGTCA CCATC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45023953	mCV24426932	ABI	CRAMUS_MOUSE	r	SNP	T	T	T	A	A
ss146149153	ENSMUSSNP1711157	ENSEMBL	ENSEMBL_Sanger	r	SNP		T	T		A
ss320115065	CHEV_1_172896612	CHEVERUD	SCREENING_POP	r	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3022857					SNP	A	A	A	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170794050 () rs orientation: reverse

Symbol	Name	Function Class
D1Mit147	DNA segment, Chr 1, Massachusetts Institute of Technology 147	1404 bp distal
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Rr20521	regulatory region 20521	1351 bp proximal
Rr372438	regulatory region 372438	502 bp upstream
Tssr14956	transcription start site region 14956	670 bp upstream
Tssr14957	transcription start site region 14957	4 bp downstream
Tssr14958	transcription start site region 14958	1723 bp downstream