rs30228729 SNP Detail

Summary

• ID
  rs30228729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45977198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTAAAACT CAATACTTTG
  AAATATATAT AATGAAATAA TACAATTTCT AGGAAAAAGA TAGTGATAAA CATGCTCATG
  GTTTTGACAA CTTGCCATAA ACCCATACAG ACCCGAGAAG AAAGAGGCTC AACTGAGGCG
  CTGCTTCCTT CCAGTAGATT GCTGGCTGGT ATGGGAGGGC CTTTCTCCTG GTCAGGTGGT
  Y
  CTGGGCTGTG AGAGATAGAC AGAGACAGAC AGAGAGACAG AGATAGCTGG TGCTGGTAGA
  GTCCTTGCCT AGTATGGTTC TGAGGCTCTG GGTTTGATAG TTGAGTTAAG CCAGAGAGCA
  AGTCAGTAAG CTTTCCATTT TCTCCACGGC CTTTGTTTTA GTGCCTGCCT TGAGCTCTGG
  CTCTGTCCCT CAGTGATGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss46386800	mCV25176537	ABI	CRAMUS_MOUSE	f	SNP		T	C			C
ss47695622	NES11315731	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30228729					SNP	T	T	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47695622	NES11315731	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45977198 () rs orientation: forward

Symbol	Name	Function Class
Gm46110	predicted gene, 46110	within coordinates
Rr209232	regulatory region 209232	604 bp proximal
Sik3	SIK family kinase 3	within coordinates