rs30228854 SNP Detail

Summary

• ID
  rs30228854
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:48818363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTATGATA GGATTACAAA
  TTAGTCTGTG CTGTGGCATA AATGAGGTGA AGGTAGGAAC CCAGAGGTAG GGGCTTGATT
  CCATCAGTGT TCAAAGCTGA AGGCTCAGTT TGTGACTAGA AAAGATGGAA GAGCCATCCA
  TCTTTTCGGC TTTGTTTTTG GTAATGACAA TGTTTCCTGA AGAGGTTATA AATAATCACA
  W
  TTTTGTTTTT GCATGTGAAA TCATTGTTTA ACTGTACTCA ACAATCTGGT TATTTAAGAG
  AATCTTATTA GAATGCTTCT GAAATATGAA GGAATCTTTC ATAATTTACT CTTTGCACCA
  ATCCAGATGT TAGTGTATTA GGGTTTTGTC AAGGAAGATC CACTGATACT ACAGGAATAT
  AGGACACTTG AACTGCATGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss46926385	NES10929864	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs30228854					SNP	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46926385	NES10929864	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:48818363 () rs orientation: forward

Symbol	Name	Function Class
Or5o1	olfactory receptor family 5 subfamily N member 1	1554 bp upstream