rs3022888 SNP Detail

Summary

• ID
  rs3022888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84432484 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GATAA ACCTGCTAAC TTGACCTGGC
  Y
  GTTTTGCAAG ATGCTTTGTA AAAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/Sv	129X1/SvJ	A	A/He	A/J	AKR	AKR/J	B10.D2-H2	BALB/c	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/He	C3H/HeJ	C57BL/6	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MRL/Mp	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss4319184	M-07672_1	WIMOUSESNPS	MITROCHE_POP	f	SNP		T		T	T		T		C	T	C				T		C						T					T												T					T											T
ss4328107	M-07672-1	WIMOUSESNPS	MITROCHE_POP	f	SNP		T		T	T		T		C	T	C				T		C						T					T												T					T											T
ss16373951	02.084.968	TWGNF	TWGNF-Mouse-2	f	SNP	T		T			C		C				C		T				T	T	T	C	C	C	C	C	C	C		C	C	C	C	C	T	T	C	C	C	C		C	T	T	T		C	C	T	C		T	C	C	C	C	C	T	C	C
ss38173181	NES09247600	PERLEGEN	MM_PANEL2	r	SNP	A					G		G				G	A			G													G		G			A					G			A				G				G
ss45353027	mCV23587974	ABI	CRAMUS_MOUSE	r	SNP						G												A											G
ss146833232	ENSMUSSNP1549399	ENSEMBL	ENSEMBL_Sanger	r	SNP						G																							G
ss320371771	CHEV_2_84442297	CHEVERUD	SCREENING_POP	r	SNP																																			A																				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/Sv	129X1/SvJ	A	A/He	A/J	AKR	AKR/J	B10.D2-H2	BALB/c	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/He	C3H/HeJ	C57BL/6	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MRL/Mp	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs3022888					SNP	T	T	T	T	T	C	T	C	C	T	C	C	T	T	T	C	C	T	T	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	T	C	C	C	C	T	C	T	T	T	T	C	C	T	C	C	T	C	C	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss4319184	M-07672_1	ROCHEBIO	RPAMM	f	SNP	C/T
ss38173181	NES09247600	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84432484 () rs orientation: reverse

Symbol	Name	Function Class
Ctnnd1	catenin delta 1	within coordinates
Gm28635	predicted gene 28635	within coordinates
Tssr25005	transcription start site region 25005	649 bp upstream
Tssr25006	transcription start site region 25006	593 bp upstream