rs30229703 SNP Detail

Summary

• ID
  rs30229703
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45315450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACCTTCCA GCTCTGCTCT
  TCCCTTTCTG TGTGTCTTCC CTTGCTCTCA GTTTTTCGGG TCTCTGGTGG GCTATGGCAC
  AAGCCCCTCT AGGTGTGGTT GGGGGAAGCA AATGTTCAGC CTTAGTTTCT TCACCTGTCA
  AATGGAACTA CTGGAGATTA TTAGATGGGG GCCGTGAGTG CTGAGAGCCT GGCGTGTGGG
  K
  GCAGACTCTC ACAGGGCGGG GCTGCTGTCC TTCTGTGTGA GTGTGTGTTG CTGGGCTCCG
  GAAGCTCGGG AGAGCTGCGT GAGTGCTTTT AAGCCATCCA GCCAGGGCTG GTCTCTGCTC
  TTACCACTTA GCAGGGAGTG GCTGGCTCTC CGATGGTACC AGCAAACAAA AGGCTAATGC
  CTGCCATTTA TCAAGCAGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46387015	mCV25163682	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	G
ss136411231	ENSMUSSNP5933448	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30229703					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45315450 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr195107	regulatory region 195107	1151 bp proximal
Rr206351	regulatory region 206351	1350 bp proximal
Rr209195	regulatory region 209195	551 bp proximal
Tssr84783	transcription start site region 84783	1578 bp downstream
Tssr84784	transcription start site region 84784	1526 bp downstream
Tssr84785	transcription start site region 84785	994 bp downstream
Tssr84786	transcription start site region 84786	963 bp downstream
Tssr84787	transcription start site region 84787	942 bp downstream
Tssr84788	transcription start site region 84788	911 bp downstream
Tssr84789	transcription start site region 84789	884 bp downstream
Tssr84790	transcription start site region 84790	1783 bp upstream
Tssr84791	transcription start site region 84791	1914 bp upstream
Tssr84792	transcription start site region 84792	1962 bp upstream