rs30230659 SNP Detail

Summary

• ID
  rs30230659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107749601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCCTGGT TGGGTGTCTG
  GGTGGGCGGC CAAGGTTACT TGCAGGGCAC AAGAGTTCCG TATCTAGTGA TGTCTCTCAG
  GACAAGATCA CAAACACAAG GGGAAAGAGA AAGAAATCTC TCCTGCAGCA CCACAGAGCT
  GAGCGCCAGA ACCGCTGCCA CGCGCGGGTC CCTCGCCCCA CAGCTGGCCG CTCCGCGCTG
  R
  GACCGGTAAT TCTACAGCCG CCTCGGGCCC CGCCCCGGGC CCGCGACCGT TCCGGGGCGT
  TCCTGCCGCG AGCGGCGCCT CCCGCGACAC ACGACTGTTT TCGCAAGCGA GCGAGGCCGC
  GGCCGCCCCG TGTCTTCGAA GCCACGGCTG CTAGGCCGCG CGGGCCCGCG ATTTCCAGAG
  CCGCCAGGCC CGCTGACCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46387021	mCV23594869	ABI	CRAMUS_MOUSE	f	SNP		A	G				G	G
ss47778699	NES11996910	PERLEGEN	MM_PANEL2	f	SNP	A			G	G	G		G	G	G	G	G	G	G
ss136950642	ENSMUSSNP4912556	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30230659					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47778699	NES11996910	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107749601 () rs orientation: forward

Symbol	Name	Function Class
4930506F14Rik	RIKEN cDNA 4930506F14 gene	86 bp upstream
Cpgi22310	CpG island 22310	within coordinates
Rbm6	RNA binding motif protein 6	within coordinates
Rr401668	regulatory region 401668	289 bp upstream
Rr686633	regulatory region 686633	within coordinates
Rr686634	regulatory region 686634	97 bp proximal
Rr686635	regulatory region 686635	409 bp proximal
Tssr87026	transcription start site region 87026	558 bp upstream
Tssr91474	transcription start site region 91474	1 bp downstream
Tssr91475	transcription start site region 91475	285 bp downstream
Tssr91476	transcription start site region 91476	346 bp downstream
Tssr91477	transcription start site region 91477	381 bp downstream
Tssr91478	transcription start site region 91478	423 bp downstream