rs30231117 SNP Detail

Summary

• ID
  rs30231117
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121285720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGGTCGGG GTGGAAATCT ATTTTGTCAT TTTGATTTGA
  TGCTGGAAGA GTAGGCCAGG AAATTCTGAC ACATTTTCCC GTCTCCTCTT TCTTTTTCCT
  W
  TGGTTTACTT TTCCATTGAG ATTTATAAGC TTTAGATGCT TACGAGAGCA AGATGCTGAA
  GAGGACACCT GCTTCCCATC TGCCTAGGAA AGAAATGAT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46926597	NES10671957	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30231117					SNP	T	T	T	T	T	T	A	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46926597	NES10671957	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121285720 () rs orientation: forward

Symbol	Name	Function Class
Rr584093	regulatory region 584093	1835 bp distal
Rr584094	regulatory region 584094	1888 bp proximal
Slc44a3	solute carrier family 44, member 3	Intron