rs30231120 SNP Detail

Summary

• ID
  rs30231120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121285890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTTCCCAT CTGCCTAGGA AAGAAATGAT TCACAGGCTG
  CTGTAAACGG GGCTGCTCCT CCAGGTACTG AAGTCTGGGT TCAGGTATCA GATTTCTGAG
  Y
  GGGTTTCACG GCAGTGGGAT AAATCATTTG GGACAGGGGA ACTGGGGTCC CTGACTTCCC
  TCCCAAGTCA CAAGGCTAAG CTCTGCAGGG CTTGTCTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45422128	mCV23991159	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss46926600	NES10671958	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30231120					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46926600	NES10671958	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121285890 () rs orientation: forward

Symbol	Name	Function Class
Rr584094	regulatory region 584094	1718 bp proximal
Slc44a3	solute carrier family 44, member 3	Intron