rs3023119 SNP Detail

Summary

• ID
  rs3023119
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46400665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAGGTCT ATAAAGAGAA
  TTCTAGAAAT GTCAGAACTG TTACACAAAG AAACTGTCTC AAAAAAAAAC CCCTTAATTA
  ATTAATAATT AGTAAATTAA TTAAATGTTA GTTTTATACT CATGTTTAAT ATTTTTTAAT
  AATTGTAAGG TTGATTTAGC CCTCCCCTCT CCATATTAGT GTGGATTGTG AACAAAATAT
  W
  CACTAATGAG CTCAGTGCTC AGTAATAAGG TAGTTGGTGT TTTAGTCATT TTATTGTATA
  AAATCCAAAA CTCAGGTCCC TTGAAAGGGT AGCACAGAGA CAGAAAGAGG GAGGGAGAGA
  TAGACAGACA GAAAGAAGCA AATGTTTAAA GTATCAGTCC TAAACAAACA AACAAACAAA
  CAAAAAACAA AAAATGAAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/Sv	A	A/He	A/J	AKR	AKR/J	B10.D2-H2	BALB/c	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/He	C3H/HeJ	C57BL/6	CAST/EiJ	DBA/2	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/Mp	NOD/ShiLtJ	NZW/Lac	PWD/PhJ	WSB/EiJ
ss4319430	M-03828_1	WIMOUSESNPS	MITROCHE_POP	f	SNP	T	A	A		A		A	A	A			A		A	T	A					A		T
ss4327359	M-03828-1	WIMOUSESNPS	MITROCHE_POP	f	SNP	T	A	A		A		A	A	A			A		A	T	A					A		T
ss48216985	NES11779500	PERLEGEN	MM_PANEL2	f	SNP				A		A				A	A		A		T		A	A	A	T		A		T	T
SNP Consensus Information
SNP					Consensus Type	129X1/Sv	A	A/He	A/J	AKR	AKR/J	B10.D2-H2	BALB/c	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/He	C3H/HeJ	C57BL/6	CAST/EiJ	DBA/2	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/Mp	NOD/ShiLtJ	NZW/Lac	PWD/PhJ	WSB/EiJ
rs3023119					SNP	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss4319430	M-03828_1	ROCHEBIO	RPAMM	f	SNP	A/T
ss48216985	NES11779500	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46400665 () rs orientation: forward

Symbol	Name	Function Class
D7Mit28	DNA segment, Chr 7, Massachusetts Institute of Technology 28	within coordinates
Gm74180	predicted gene, 74180	within coordinates
Rr380764	regulatory region 380764	1771 bp downstream
Saa2	serum amyloid A 2	592 bp upstream
Tssr66700	transcription start site region 66700	591 bp upstream
Tssr66701	transcription start site region 66701	1112 bp upstream