rs30231339 SNP Detail

Summary

• ID
  rs30231339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45978925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGCACAC TGCTTAAGGC
  AGCCTGTATA GATTAGTTTA ATACTCAGAA TTTCTCAGGA AACCTGGAGT GGTCAAGCTA
  CATAGCCAGT CTCCCACTCT GTAGGTAGGC AGTGTAGAGG GAAATTTCAT TTATTGTTTG
  GAGAATTAGA CAACTTTTAC AACATGCTTA GTGACCAAGA ATTCTGATTT TTAACTCCAC
  R
  CCAGAGCCTC CAGTGAAAGC CGTCTTTGAG GTTCTAGTAG GAGATTATAA TGGCTTCTGG
  TCAGCTAGCT CCCAGCTGTG GTCTTTATAG GGCAGAGGTG GGAACTCTCA GCGGTTGCCA
  GCCGCTCTTG CCTTGGGCTG GGCCTTGGAG GAACTCAAGG GAAACTCCCA GCCCAGGTCC
  CCAGCCTGGC TTTCCTAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46385852	mCV25176550	ABI	CRAMUS_MOUSE	f	SNP	G	A					A
ss47695632	NES11315580	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	G	G	A	A	A	A
ss136422461	ENSMUSSNP4864299	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30231339					SNP	G	A	A	A	A	A	A	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47695632	NES11315580	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45978925 () rs orientation: forward

Symbol	Name	Function Class
Gm46110	predicted gene, 46110	within coordinates
Rr209232	regulatory region 209232	within coordinates
Rr383304	regulatory region 383304	879 bp upstream
Sik3	SIK family kinase 3	within coordinates