rs30231503 SNP Detail

Summary

• ID
  rs30231503
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106769259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCA TTGGTCCACG TGCCCAGGAG
  Y
  CCAGACCGGC GGCTCCACGC TACCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46386447	mCV22323057	ABI	CRAMUS_MOUSE	f	SNP		T	T						C
ss47774674	NES11262121	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T	C	C	T	C		C	T	T	C		T
ss136941104	ENSMUSSNP6791418	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss323187634	CHEV_9_106794391	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30231503					SNP	T	T	T	T	T	C	T	C	C	T	C	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47774674	NES11262121	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106769259 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	within coordinates
Cpgi22278	CpG island 22278	within coordinates
Dock3	dedicator of cyto-kinesis 3	765 bp downstream
Manf	mesencephalic astrocyte-derived neurotrophic factor	122 bp upstream
Rr368849	regulatory region 368849	within coordinates
Rr686409	regulatory region 686409	656 bp distal
Rr686410	regulatory region 686410	539 bp distal
Rr686411	regulatory region 686411	252 bp distal
Rr686412	regulatory region 686412	84 bp distal
Rr686413	regulatory region 686413	within coordinates
Rr686414	regulatory region 686414	165 bp proximal
Rr686415	regulatory region 686415	1374 bp proximal
Tssr86942	transcription start site region 86942	1849 bp downstream
Tssr86943	transcription start site region 86943	54 bp upstream
Tssr86944	transcription start site region 86944	390 bp upstream
Tssr86945	transcription start site region 86945	416 bp upstream
Tssr91353	transcription start site region 91353	687 bp upstream
Tssr91354	transcription start site region 91354	669 bp upstream
Tssr91355	transcription start site region 91355	663 bp upstream
Tssr91356	transcription start site region 91356	622 bp upstream
Tssr91357	transcription start site region 91357	140 bp upstream
Tssr91358	transcription start site region 91358	113 bp upstream
Tssr91359	transcription start site region 91359	90 bp upstream