rs30231629 SNP Detail

Summary

• ID
  rs30231629
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123622189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTGCCCT TCTAGTCTGG
  TACAGTTCTC TCTCTTCAGG AGGTCCCAGT ACTCTCACTT ATGGGCTTCT TGGGGTTTGA
  GTGAAGAGTG GGGCCGCAAG TCTCTGCCCT CACTTGTCTA GCTGCTCTGA GGTGCCAGTG
  GTCAGGACTG CATGGGGAAA TGAAGTAGGT GCCATGGGCT GTCTCAGCAG AGGCCAGAAT
  R
  TACAGGATGT TCATGTGCCA TGGGCAGAGT TCATTTTCCA GCGCACTATA CCACCCAGGT
  TTCCCAGGAG CCTGTGGGAG GCTTGCATGC TGCCCTTCAC TTCTCTTTCT CTCTCTCCCC
  AGATCGAGGC TCAGTGAGAC ACTGACAAGT AGCTAGAGCT GCAGCAGGAA AAACAAGGCT
  AGATTGATCC TGACCCTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss46385676	mCV23332179	ABI	CRAMUS_MOUSE	f	SNP		A	G	G		G
ss61241399	NES16861469	PERLEGEN	MM_PANEL2	f	SNP	A				G		A	G
ss137081822	ENSMUSSNP6538529	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs30231629					SNP	A	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61241399	NES16861469	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123622189 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	within coordinates
Tssr92157	transcription start site region 92157	1058 bp upstream
Tssr92158	transcription start site region 92158	1052 bp upstream
Tssr92159	transcription start site region 92159	1028 bp upstream
Tssr92160	transcription start site region 92160	653 bp upstream
Tssr92161	transcription start site region 92161	632 bp upstream
Tssr92162	transcription start site region 92162	1701 bp downstream