rs30232016 SNP Detail

Summary

• ID
  rs30232016
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121286044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTCCCTCC CAAGTCACAA GGCTAAGCTC TGCAGGGCTT
  GTCTGCAGGA GGACACAGAG GTTTAGAAGC TGGGTTATCA CATGATGAGA GAGGGAACTT
  W
  AAAAAAAAAA GGTCCTTTGA ACCCAAGCCA AGAGTCACTC AATACCTGTT TTCAATCTAG
  AGACAGTCCT GCAAAGGAGA GACTAAGTTG AGTGTCTTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45502920	mCV23991157	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		A
ss46926606	NES10671960	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	A	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30232016					SNP	T	T	T	T	T	T	T	T	T	A	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46926606	NES10671960	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121286044 () rs orientation: forward

Symbol	Name	Function Class
Rr584094	regulatory region 584094	1564 bp proximal
Slc44a3	solute carrier family 44, member 3	Intron