rs30232285 SNP Detail

Summary

• ID
  rs30232285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46037483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGTTTT GTTTTGTTTT
  GTTTTGTTAA ATATACTATC TGCATTGGTG TTTTGCCTGG ATGCCTGTGC ACACGTGGAT
  GTGATCCTTT GGAACTGGAG TTACATAGAC AGTTACAAGC TGCTCTGTGG GTGCTGGGAA
  TTCAACCTAG GTCCTACGGA AGAACAACCA GTGCTTGTAA CCCCTGAGCC ATCTTGCCAA
  Y
  CCCAATGTAT TTTATTTTAG CTTAAGGTCA TTTTAAGGTA AAAATTGAAA CAGTCTAAAA
  TGTTTTTATG ATCATTGAAA GGATAATGTT CTGGGAACAT TGAGGTAAAT GTTGACTGTT
  GTTTCTGACT TCTGTTTTAA ATCGTGGCCT TATATAACAT GGGGGCTGCA GCTCAGTTGT
  GTCATCCTAG CATCCTCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46387506	mCV25177262	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss136423295	ENSMUSSNP5144436	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30232285					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46037483 () rs orientation: forward

Symbol	Name	Function Class
Rr678056	regulatory region 678056	165 bp proximal
Rr678057	regulatory region 678057	1234 bp proximal
Sik3	SIK family kinase 3	within coordinates
Tssr84829	transcription start site region 84829	1048 bp upstream