rs3023231 SNP Detail

Summary

• ID
  rs3023231
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106766124 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCTCC TGACAATGAG ATGTGAACCT
  R
  GAGCTTTCCT AGTGATGCTG GCTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/Sv	129X1/SvJ	A	A/He	A/J	AKR	AKR/J	B10.D2-H2	BALB/c	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/He	C3H/HeJ	C57BL/6	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MRL/Mp	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss4319547	M-04055_1	WIMOUSESNPS	MITROCHE_POP	f	SNP		G		G	G		G		A	G	G				G		A							G					A												G					G
ss4327177	M-04055-1	WIMOUSESNPS	MITROCHE_POP	f	SNP		G		G	G		G		A	G	G				G		A							G					A												G					G
ss16378748	09.109.522	TWGNF	TWGNF-Mouse-2	f	SNP	G		G			G		G				G	G	G		G		A	A	A	A	A	A	G	A	G	A	A		A	A	G	G	A	A	G	G	G	A	A		A	G	G	G		G	A	G	A	G	G	G	G	G	G	G	G	G	G
ss136941082	ENSMUSSNP612839	ENSEMBL	ENSEMBL_Sanger	r	SNP			C																											T
ss323187623	CHEV_9_106791256	CHEVERUD	SCREENING_POP	r	SNP																																				C																			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/Sv	129X1/SvJ	A	A/He	A/J	AKR	AKR/J	B10.D2-H2	BALB/c	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/He	C3H/HeJ	C57BL/6	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MRL/Mp	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs3023231					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	A	A	A	A	A	A	G	A	G	A	A	A	A	A	G	G	A	A	G	G	G	A	A	G	A	G	G	G	G	G	A	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss4319547	M-04055_1	ROCHEBIO	RPAMM	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106766124 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi22277	CpG island 22277	1248 bp distal
Manf	mesencephalic astrocyte-derived neurotrophic factor	within coordinates
Rbm15b	RNA binding motif protein 15B	1850 bp upstream
Rr401656	regulatory region 401656	1447 bp downstream
Rr686406	regulatory region 686406	1634 bp distal
Rr686407	regulatory region 686407	1007 bp distal
Rr686408	regulatory region 686408	889 bp distal
Tssr86942	transcription start site region 86942	1256 bp upstream
Tssr91351	transcription start site region 91351	1831 bp upstream
Tssr91352	transcription start site region 91352	1813 bp upstream