rs3023263 SNP Detail

Summary

• ID
  rs3023263
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57720153 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCGGC TCTTGAAGGC TCGACTCAAG
  R
  TGGGACTGGA GAAGACCAAG CCCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/Sv	129X1/SvJ	A	A/He	A/J	AKR	AKR/J	B10.D2-H2	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/He	C3H/HeJ	C57BL/6	C57BL/6J	CAST/EiJ	DBA/2	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MRL/Mp	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss4319579	M-07019_2	WIMOUSESNPS	MITROCHE_POP	f	SNP		G		G	G		A		A	A			G		A		A	G					G		A
ss4327888	M-07019-2	WIMOUSESNPS	MITROCHE_POP	f	SNP		G		G	G		A		A	A			G		A		A	G					G		A
ss37198250	NES08433969	PERLEGEN	MM_PANEL2	r	SNP	C					C		T			T	T		C			T		C	C		T		C		T	T		T
ss38680147	mCV23861149	ABI	CRAMUS_MOUSE	r	SNP			C			C										T			C
ss132181248	ENSMUSSNP3619209	ENSEMBL	ENSEMBL_Sanger	r	SNP			C			C													C
ss323685755	CHEV_11_57642829	CHEVERUD	SCREENING_POP	r	SNP																					C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/Sv	129X1/SvJ	A	A/He	A/J	AKR	AKR/J	B10.D2-H2	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/He	C3H/HeJ	C57BL/6	C57BL/6J	CAST/EiJ	DBA/2	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MRL/Mp	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3023263					SNP	G	G	G	G	G	G	A	A	A	A	A	A	G	G	A	A	A	G	G	G	G	A	G	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss4319579	M-07019_2	ROCHEBIO	RPAMM	f	SNP	A/G
ss37198250	NES08433969	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57720153 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi2910	CpG island 2910	967 bp distal
Cpgi2911	CpG island 2911	within coordinates
Cpgi2912	CpG island 2912	1908 bp proximal
Hand1	heart and neural crest derivatives expressed 1	within coordinates
Rr447811	regulatory region 447811	1570 bp distal
Rr447812	regulatory region 447812	810 bp distal
Rr447813	regulatory region 447813	within coordinates
Rr447814	regulatory region 447814	158 bp proximal
Tssr3506	transcription start site region 3506	56 bp upstream
Tssr108123	transcription start site region 108123	364 bp upstream
Tssr108124	transcription start site region 108124	307 bp upstream
Tssr108125	transcription start site region 108125	262 bp upstream
Tssr108126	transcription start site region 108126	81 bp upstream
Tssr108127	transcription start site region 108127	14 bp upstream
Tssr108128	transcription start site region 108128	2 bp upstream
Tssr108129	transcription start site region 108129	119 bp downstream