rs3023273 SNP Detail

Summary

• ID
  rs3023273
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69047470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTT GTGGTCTTTA GTCTCCTGGC
  Y
  TCAACATTCT TCCTGATGTG TACTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	SPRET/EiJ	WSB/EiJ
ss12732533	Y18477_629K_3	ROCHEBIO	RPAMM	f	SNP		T		T	T	C		C					C		T		T
ss37167777	NES08490011	PERLEGEN	MM_PANEL2	f	SNP	T		T			C	T	C	T	T	T	T		T		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	SPRET/EiJ	WSB/EiJ
rs3023273					SNP	T	T	T	T	T	C	T	C	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37167777	NES08490011	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69047470 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	428 bp upstream
Cpgi3111	CpG island 3111	295 bp proximal
Rr449891	regulatory region 449891	98 bp proximal
Rr449892	regulatory region 449892	356 bp proximal
Rr449893	regulatory region 449893	1465 bp proximal
Tssr102419	transcription start site region 102419	244 bp upstream
Tssr102420	transcription start site region 102420	269 bp upstream
Tssr102421	transcription start site region 102421	388 bp upstream
Tssr102422	transcription start site region 102422	409 bp upstream
Tssr102423	transcription start site region 102423	419 bp upstream
Tssr102424	transcription start site region 102424	440 bp upstream