rs3023274 SNP Detail

Summary

• ID
  rs3023274
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69047513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTCCAAAC CCTTCCACCC TGCATCTCTT GTCCCTTGTG
  GTCTTTAGTC TCCTGGCTTC AACATTCTTC CTGATGTGTA CTGCAGGCCC TGGGTTCTAA
  Y
  GCAAAAGCAG GACACTGGAC AGCACGTCTG TATCACTCCT CATGCCTTCC AAAGCAGGTC
  ACTTCTGATT TTGGCCAGGT TCAGCATGGG TGCCTGTCG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38849192	mCV24154332	ABI	CRAMUS_MOUSE	f	SNP		C	C	T
ss132350004	ENSMUSSNP4316746	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3023274					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69047513 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	385 bp upstream
Cpgi3111	CpG island 3111	252 bp proximal
Rr449891	regulatory region 449891	55 bp proximal
Rr449892	regulatory region 449892	313 bp proximal
Rr449893	regulatory region 449893	1422 bp proximal
Tssr102419	transcription start site region 102419	201 bp upstream
Tssr102420	transcription start site region 102420	226 bp upstream
Tssr102421	transcription start site region 102421	345 bp upstream
Tssr102422	transcription start site region 102422	366 bp upstream
Tssr102423	transcription start site region 102423	376 bp upstream
Tssr102424	transcription start site region 102424	397 bp upstream