rs3023307 SNP Detail

Summary

• ID
  rs3023307
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74595302 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCCTG CTTAGGACTC GTGTTTGATT
  Y
  CCAGAAGCCA CATGTTGGCT CATAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38673155	mCV23961981	ABI	CRAMUS_MOUSE	r	SNP	A	G	G	A
ss132435309	ENSMUSSNP4640307	ENSEMBL	ENSEMBL_Sanger	r	SNP	A	G		A
ss323749413	CHEV_11_74517978	CHEVERUD	SCREENING_POP	r	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3023307					SNP	T	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74595302 () rs orientation: reverse

Symbol	Name	Function Class
Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	within coordinates
Rr386282	regulatory region 386282	1512 bp upstream
Tssr109134	transcription start site region 109134	1141 bp downstream