rs30233357 SNP Detail

Summary

• ID
  rs30233357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44215576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAAGTAC TTTACTGAGC
  CACCTCTAGC CTCATATTAA GCATTTTATT TGCATCATGT TATTAGTAAC ACTATGAGGC
  AGGCATCATT TAAACCTCAT TTATAGATAA GCTGAAGCTG AGCCCAAAGT TCATATTCTT
  ATTTCATATA GCCTACATGA CCCTGAAGCA TTCTACTCCT TACTGGATTA CGTTAAATTT
  Y
  CCGTCAGGCA TTCAATACCA TAATTTGTCT TTGCTTTGCC CACACAATAC TAGATCCCAC
  TACTCCTTTA ACGTTAAAAT GTAGATTCCA TTTGACTGAA GGAGCCCTGT TTACACTCCA
  GTGTCTATAC TTTACTAAAC ATTTTTAAGA ATATAATAAG CTGGGCGTGG TGGTGCACGC
  CTTTAATCCC AGCACTCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46386951	mCV23032957	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T		T
ss47687444	NES11335383	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	T	T	T	C	T	T	C	T
ss136393646	ENSMUSSNP5077936	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30233357					SNP	C	C	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47687444	NES11335383	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44215576 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21648	CpG island 21648	942 bp proximal
Hinfp	histone H4 transcription factor	within coordinates
Rr206299	regulatory region 206299	24 bp proximal
Rr368726	regulatory region 368726	1404 bp upstream
Tssr89139	transcription start site region 89139	1316 bp downstream