rs3023348 SNP Detail

Summary

• ID
  rs3023348
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:73976445 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAGCA TTTGGGAGGC AGAGGTAGGT
  R
  GCCCTCTATG AGTTCAAGAA CAACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38892887	mCV24196962	ABI	CRAMUS_MOUSE	r	SNP	C	C	T
ss137890996	ENSMUSSNP6964481	ENSEMBL	ENSEMBL_Sanger	r	SNP	C	C
ss324099302	CHEV_12_75030658	CHEVERUD	SCREENING_POP	r	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs3023348					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73976445 () rs orientation: reverse

Symbol	Name	Function Class
Hif1a	hypoxia inducible factor 1, alpha subunit	within coordinates
Rr467875	regulatory region 467875	1777 bp proximal
Tssr113853	transcription start site region 113853	1460 bp downstream
Tssr113854	transcription start site region 113854	1028 bp upstream
Tssr113855	transcription start site region 113855	1889 bp upstream