rs3023349 SNP Detail

Summary

• ID
  rs3023349
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:73977093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGT AAAAGACATG AAGTATTTAC
  W
  CAAGTTCTTT TGAAGGGGAC ATACT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss4319676	Y09085_414F_2	ROCHEBIO	RPAMM	f	SNP	A	A			T		T
ss47155812	NES11245674	PERLEGEN	MM_PANEL2	f	SNP		T	T	T		A	A	T	T		A	A	T	A		T
ss324099306	CHEV_12_75031306	CHEVERUD	SCREENING_POP	f	SNP										A					T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3023349					SNP	A	?	T	T	T	A	?	T	T	A	A	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47155812	NES11245674	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73977093 () rs orientation: forward

Symbol	Name	Function Class
Hif1a	hypoxia inducible factor 1, alpha subunit	within coordinates
Rr467875	regulatory region 467875	1129 bp proximal
Tssr113854	transcription start site region 113854	380 bp upstream
Tssr113855	transcription start site region 113855	1241 bp upstream