rs30233511 SNP Detail

Summary

• ID
  rs30233511
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44389686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGTGGGA GTGAAGTCAT
  GGTTTCCAGA AACTCAGACC CTTGTCCTTG TCCTAGCTGG AGAGGCTATA GAGTTCTCTG
  GTTCAGATGA GTAGGTCTCT TTTCTAAGCA GTGAAAGCCA AGTGGGGTGG TCACTGCGCT
  GGAACCCCTG GGACAAGCTT TAGTGGAGAC TGTTCACGTA GCTTCAAAAT CCAGACTTCC
  R
  CCTCCCTGCA GCCATTTATC TGTCAAGGGC TTCAGCCAGA GGGAGGGAGG AAGGTAGCCC
  ACCAGTGAAG GGAAGACGAC AGGATGGGAG CAGGAGGTAG GCAGTTAAGA CAGGGTTCGA
  AAGCGGATGG CTTTCGGCAG CTTTCAGGTA CCCGCTTTGC GTGTCGTTTC TCCTGTTACT
  GGCAGCCTTT CAGGGATCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46386076	mCV25082982	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G		G
ss47688684	NES11326840	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		A	G	G	G	A	G	G	A	G
ss136396174	ENSMUSSNP2768556	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30233511					SNP	A	A	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688684	NES11326840	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44389686 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	51 bp proximal
Cpgi21660	CpG island 21660	767 bp proximal
Cpgi21661	CpG island 21661	1518 bp proximal
Gm10023	predicted gene 10023	within coordinates
Gm22540	predicted gene, 22540	1874 bp upstream
Gm47204	predicted gene, 47204	within coordinates
Rr368728	regulatory region 368728	1687 bp upstream
Rr677665	regulatory region 677665	within coordinates
Rr677666	regulatory region 677666	395 bp distal
Rr677667	regulatory region 677667	81 bp proximal
Rr677668	regulatory region 677668	973 bp proximal
Rr677669	regulatory region 677669	1398 bp proximal
Rr677670	regulatory region 677670	1861 bp proximal
Tssr89164	transcription start site region 89164	1335 bp downstream
Tssr89165	transcription start site region 89165	1363 bp downstream