rs30233517 SNP Detail

Summary

• ID
  rs30233517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121383506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGACCCAA CAATGCAGAT CTGTCGGTCC CCCTACGCCT
  TTCCTTTGTT CTTTCTTTAG TTGGTTTCGG GACCGGATCT TGTGTCATGG TTGAGGCTGA
  Y
  CTCAATTCTG TAACTAGCCT AAGATGGCCT CAAACTCAGG ATCCCCTCCT ACCCCCTGCC
  TCGTCCACCC AAGCACTGCG ATTGCAGACA TTGTTGGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46928127	NES10667300	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	T	C	C		T	C	C		C
ss135724597	ENSMUSSNP1433161	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss320904045	CHEV_3_121292775	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30233517					SNP	C	C	C	C	C	C	T	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46928127	NES10667300	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121383506 () rs orientation: forward

Symbol	Name	Function Class
Gm33485	predicted gene, 33485	within coordinates
Gm65965	predicted gene, 65965	295 bp upstream
Rr584122	regulatory region 584122	30 bp distal
Tssr1037	transcription start site region 1037	467 bp upstream