rs30233520 SNP Detail

Summary

• ID
  rs30233520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121383664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGGTTTC GGGACCGGAT
  CTTGTGTCAT GGTTGAGGCT GACCTCAATT CTGTAACTAG CCTAAGATGG CCTCAAACTC
  AGGATCCCCT CCTACCCCCT GCCTCGTCCA CCCAAGCACT GCGATTGCAG ACATTGTTGG
  CTGGGCTAGG ATCTGCTTTC CATCTGGGAC CCAGAGCCAA TGAAGCTTCC TCTGGGAAGC
  Y
  CTCTACAAGT GCACTTTCCA CAACTCATTT CAGAGTTGTT GTGTCCCTGG GTCCCCACTC
  CCAGCAACTG TACTACCGGG GATACCAAAG TGTGCGTCAT AGCTGGAGTA ATCACGTGAG
  TGTCTCCCCA CCTGGAGGAG GGCTCCTTGA AACCGGAGGC TGAGGCTTCC TCTCCTCTTT
  CTCTTCTGCA TTAGTCCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ
ss46928130	NES10667301	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ
rs30233520					SNP	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46928130	NES10667301	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121383664 () rs orientation: forward

Symbol	Name	Function Class
Gm33485	predicted gene, 33485	within coordinates
Gm65965	predicted gene, 65965	137 bp upstream
Rr584122	regulatory region 584122	188 bp distal
Tssr1037	transcription start site region 1037	625 bp upstream