rs3023391 SNP Detail

Summary

• ID
  rs3023391
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92491654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCACTTTC TCGCGCCTGC
  GCGCGCGCAC GCCTCAACCT GTGCGGGACC GGCCTTGGGG GCGGAGCCTT AGCTACACAA
  ATAGAATGCG CGGCGGGCCT TGGTGGGGGC GGGGCCTTAG CTGCACAAAT AGGATGCGCG
  GCGGGCCTTG GTAGGGGCGG AGCCTTAGCT GCACAAATAG GATGCGCGGC GGGCCTTGGT
  R
  GGGGCGGGGC CTAAGCTGCG CAAGTGGTAC ACAGCTCAGG GCTGCGATTT CGCGCCAAAC
  TTGACGGCAA TCCTAGCGTG AAGGCTGGTA GGATTTTATC CCCGCTGCCA TCATGGTTCG
  ACCATTGAAC TGCATCGTCG CCGTGTCCCA AAATATGGGG ATTGGCAAGA ACGGAGACCT
  ACCCTGGCCT CCGCTCAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39072854	mCV23768855	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss324480478	CHEV_13_93125101	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3023391					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92491654 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5933	CpG island 5933	within coordinates
Dhfr	dihydrofolate reductase	within coordinates
Gm19308	predicted gene, 19308	1204 bp downstream
Msh3	mutS homolog 3	139 bp upstream
Rr403896	regulatory region 403896	345 bp downstream
Rr483661	regulatory region 483661	410 bp distal
Rr483662	regulatory region 483662	608 bp distal
Rr483663	regulatory region 483663	458 bp distal
Rr483664	regulatory region 483664	within coordinates
Tssr120622	transcription start site region 120622	380 bp downstream
Tssr120623	transcription start site region 120623	within coordinates
Tssr120624	transcription start site region 120624	40 bp upstream
Tssr120625	transcription start site region 120625	66 bp upstream
Tssr120626	transcription start site region 120626	93 bp upstream
Tssr123429	transcription start site region 123429	626 bp upstream
Tssr123430	transcription start site region 123430	121 bp upstream