rs3023398 SNP Detail

Summary

• ID
  rs3023398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:21881390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCA GGTCCTCGCC TCTGGGGCTG
  Y
  CCTGGACATT GCCTAACCCG AGGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	ST/bJ	ZALENDE/EiJ
ss16380880	C14.015.215	TWGNF	TWGNF-Mouse-2	f	SNP			C	C	T	T	T	C	T	T	T	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	T	T	C	C	C	C	C	C	C	C
ss39300858	mCV23043805	ABI	CRAMUS_MOUSE	f	SNP	T	T					T										C
ss324566726	CHEV_14_22650544	CHEVERUD	SCREENING_POP	f	SNP																					T																	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	ST/bJ	ZALENDE/EiJ
rs3023398					SNP	T	T	C	C	T	T	T	C	T	T	T	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	T	T	C	C	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:21881390 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6221	CpG island 6221	within coordinates
Rr296889	regulatory region 296889	within coordinates
Tssr124454	transcription start site region 124454	197 bp upstream
Tssr124455	transcription start site region 124455	209 bp upstream
Tssr124456	transcription start site region 124456	520 bp upstream
Tssr124457	transcription start site region 124457	1560 bp upstream
Tssr127690	transcription start site region 127690	193 bp upstream
Vdac2	voltage-dependent anion channel 2	239 bp upstream