rs3023399 SNP Detail

Summary

• ID
  rs3023399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:21881415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG GACATTGCCT AACCCGAGGC
  Y
  CCGCAGCTCC TGCTCGCCCC GTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39247269	mCV23043804	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss139200682	ENSMUSSNP5767149	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss324566727	CHEV_14_22650569	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3023399					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:21881415 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6221	CpG island 6221	within coordinates
Rr296889	regulatory region 296889	within coordinates
Tssr124454	transcription start site region 124454	172 bp upstream
Tssr124455	transcription start site region 124455	184 bp upstream
Tssr124456	transcription start site region 124456	495 bp upstream
Tssr124457	transcription start site region 124457	1535 bp upstream
Tssr127690	transcription start site region 127690	218 bp upstream
Vdac2	voltage-dependent anion channel 2	214 bp upstream