rs3023440 SNP Detail

Summary

• ID
  rs3023440
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91442908 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACCTT ACCAGTCTGC TTGGGTTTTC
  B
  TTAAATATGT AATCCCAAAG TAAAG                                      
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss4319799	U20874_123_1	ROCHEBIO	RPAMM	f	SNP	T				T										G					T
ss6381956	mCV24793440_89722753	CRAMUS	CRAMUS_MOUSE	r	SNP		A	A	A					G											A
ss16382129	16.093.082	TWGNF	TWGNF-Mouse-2	f	SNP					T	C	T	T	C	C	C	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T
ss39477281	mCV24793440	ABI	CRAMUS_MOUSE	r	SNP		A	A	A					G											A
ss148555936	ENSMUSSNP6745462	ENSEMBL	ENSEMBL_Sanger	r	SNP			A	A																A
ss325277536	CHEV_16_91646265	CHEVERUD	SCREENING_POP	r	SNP																									G														A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs3023440					SNP	T	T	T	T	T	C	T	T	C	C	C	C	C	T	?	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91442908 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi8459	CpG island 8459	649 bp proximal
Gart	phosphoribosylglycinamide formyltransferase	within coordinates
Rr319637	regulatory region 319637	308 bp distal
Rr325570	regulatory region 325570	within coordinates
Rr404966	regulatory region 404966	1538 bp upstream
Son	Son DNA binding protein	1804 bp upstream
Tssr139422	transcription start site region 139422	1040 bp upstream
Tssr139423	transcription start site region 139423	1822 bp upstream
Tssr139424	transcription start site region 139424	1839 bp upstream
Tssr142101	transcription start site region 142101	886 bp downstream
Tssr142102	transcription start site region 142102	1609 bp downstream
Tssr142103	transcription start site region 142103	1671 bp downstream