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rs30234516 SNP Detail
Summary
  • ID
    rs30234516
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr9:103289451 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGGAGCATAG ACTGTTCAGA
    GGACAGTTCT GCATGAACCA CAGGGGCTCC TACAGAATCT AGAGTCTGCT GAGGCAGTAG
    GCTGGCTGGG CAGCCAGCCT CTGGAATCTT CCCATCTCCT CCTTCCCCAC ACCCGAGTTA
    CAGATGTGTG CCACTGTGCT GGACTTTTCA TGTTGGATCC AAACGGAGGC CTTCTCTCTT
    R
    TGCTTTGCAC ACCGAGCCGT CTCCTCAGCC CCTTAGTGGT GAGCCCCTAA GTGACTGATT
    CTTTCATATT AATTTTCCAG GATAACAAGA TTTTTTATCA TGAGTAGAGC TTTTAAAACT
    TTTTTTTTTA TTTTGAAAGA AGTTCAGACT TTTGGAAAGA TTCCAAGAAT AGGCCAAAGA
    ATCCTCATAC TGCATTTATA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
C57BL/6J
ss46388287 mCV25258451 ABI CRAMUS_MOUSE f SNP A A G G
ss136877654 ENSMUSSNP992248 ENSEMBL ENSEMBL_Sanger f SNP A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
C57BL/6J
rs30234516 SNP A A G G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:103289451 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
D9Mit242 DNA segment, Chr 9, Massachusetts Institute of Technology 242 1115 bp proximal
Gm47328 predicted gene, 47328 105 bp downstream
Gm69201 predicted gene, 69201 within coordinates
Rr198513 regulatory region 198513 within coordinates
Rr198514 regulatory region 198514 350 bp proximal
Rr207103 regulatory region 207103 751 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory