rs30235498 SNP Detail

Summary

• ID
  rs30235498
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121384066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTGATAAA TCCTACCAGC TCCGAGGTAT CACAGCCCTG
  TTTCAGACCT TTCCAACGGA GAGTTTTTAC TGGCTATCAG GCTATTGCCA GGCTGAGTGA
  Y
  GCTTTTAAAC GAATATTTGT ATGGGCGTTT TGCCTGCATG TGCCTGTAAA CCATGTGAGC
  CTAGTGTCTA TCCACAGAGG CCTGGTGAGG GTGCCAGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46928148	NES10667307	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	T	C	C		T	C	C	T		C
ss135724612	ENSMUSSNP1251176	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss320904050	CHEV_3_121293335	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30235498					SNP	C	C	?	C	C	C	C	T	T	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46928148	NES10667307	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121384066 () rs orientation: forward

Symbol	Name	Function Class
Gm33485	predicted gene, 33485	within coordinates
Gm65965	predicted gene, 65965	within coordinates
Rr584122	regulatory region 584122	590 bp distal
Tssr1037	transcription start site region 1037	1027 bp upstream