rs30236032 SNP Detail

Summary

• ID
  rs30236032
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44216371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAAAGTT AAGATGGTCT
  CACAAAAAAG AAAGCCACCA CGGACATCAC ATTATGTCTA AGGGTGTATC TGTCTGAAGA
  GGAAGTCAGA AGGATGGAGA AGGAAAATAA AACGAAACTC CTTAGTTTTG TGATCTTAAA
  TTACTTAAGC CATATGGGCC TAATGCACTA CTGAGGCTCA CTAAGGGTTT GCTACATCTA
  K
  CCTTGTTTCT GAGTGTTAAT TAGGGGATGG AGAAGCATCC AACCCCCCCA GGATCCTTAC
  CTGACATTTC ATCACTAGTC AAAGTACAAA ACCATCCCAT CAACAATTAT CAGGAGAGTA
  TATACTCTAT CGCCAGGCAC CAATGAACTC TGAGCCACAA TCCAGAAGAA AGGCCCAGGT
  CCTAAACAAG GACTCACAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46387756	mCV23032967	ABI	CRAMUS_MOUSE	f	SNP		T	G					G
ss47687448	NES11335336	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		T	G	G	G	G	G	T	G
ss136393655	ENSMUSSNP6750014	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30236032					SNP	T	T	G	G	G	G	G	G	T	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47687448	NES11335336	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44216371 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21648	CpG island 21648	147 bp proximal
Hinfp	histone H4 transcription factor	within coordinates
Rr206299	regulatory region 206299	within coordinates
Rr368726	regulatory region 368726	609 bp upstream
Tssr89139	transcription start site region 89139	521 bp downstream