rs30236164 SNP Detail

Summary

• ID
  rs30236164
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40712460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTC TTCATTAGTG CAGTCGGCAA
  R
  GGCTGGTCGT CCATTGGCTA AGAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss46388048	mCV24020649	ABI	CRAMUS_MOUSE	f	SNP	A				G	A
ss52005329	NES15018994	PERLEGEN	MM_PANEL2	f	SNP		A	A	A		A		G	G
ss136338413	ENSMUSSNP6248948	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A				A
ss322919699	CHEV_9_40609247	CHEVERUD	SCREENING_POP	f	SNP							A			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs30236164					SNP	A	A	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52005329	NES15018994	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40712460 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21602	CpG island 21602	1008 bp distal
Cpgi21603	CpG island 21603	within coordinates
Gm57042	predicted gene, 57042	119 bp upstream
Hspa8	heat shock protein 8	112 bp upstream
Rr206240	regulatory region 206240	within coordinates
Rr383256	regulatory region 383256	within coordinates
Tssr84479	transcription start site region 84479	1798 bp downstream
Tssr84480	transcription start site region 84480	1058 bp downstream
Tssr84481	transcription start site region 84481	102 bp upstream
Tssr84482	transcription start site region 84482	741 bp upstream
Tssr84483	transcription start site region 84483	1202 bp upstream
Tssr84484	transcription start site region 84484	1461 bp upstream
Tssr88972	transcription start site region 88972	378 bp upstream