rs30236602 SNP Detail

Summary

• ID
  rs30236602
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:60178971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAAAAA GAATGATTGC
  TGCCACGGGT AACATCTGAG GAAGCCATCA GGAAGGATTC AGATAATTAT CTGCTTTAAA
  AAGGAATCTA AACACAAACA AATAACGCAC ACAGAACACA GACCTTCCCA GGCTTCTCAG
  CCCAGAGTTC TGTGTTTGCT TTGGTACCCA GCACAGCCAG CATAGCTTCA TAAGGGCGCT
  Y
  GTGAAGAAGA TCTAGTTCTG TTGGAGGCTC AGTTACAAAG GCGAATGTCC AAGGCACCGG
  GGTGTGATGC TGCCATGGGA TGGGGGTTGA GCACCAGGAA GCCGATGCCC ATGAGTCATC
  TGTCCTACAG TATAGAGGAG GGGAATGGGT CTCCTGGAAG TGACATTAGA ATTGTGACTA
  TTCTGGAAGC TGTGGGCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss49114628	NES12407669	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	T		C	T	C	C
ss324360231	CHEV_13_60132518	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30236602					SNP	C	C	C	T	C	C	C	C	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49114628	NES12407669	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:60178971 () rs orientation: forward

Symbol	Name	Function Class
A530065N20Rik	RIKEN cDNA A530046M15 gene	within coordinates
Rr284562	regulatory region 284562	772 bp distal
Tssr120109	transcription start site region 120109	1528 bp downstream
Tssr120110	transcription start site region 120110	1464 bp downstream
Tssr120111	transcription start site region 120111	1448 bp downstream