rs30236603 SNP Detail

Summary

• ID
  rs30236603
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:60178968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAACAAA AAAGAATGAT
  TGCTGCCACG GGTAACATCT GAGGAAGCCA TCAGGAAGGA TTCAGATAAT TATCTGCTTT
  AAAAAGGAAT CTAAACACAA ACAAATAACG CACACAGAAC ACAGACCTTC CCAGGCTTCT
  CAGCCCAGAG TTCTGTGTTT GCTTTGGTAC CCAGCACAGC CAGCATAGCT TCATAAGGGC
  S
  CTCGTGAAGA AGATCTAGTT CTGTTGGAGG CTCAGTTACA AAGGCGAATG TCCAAGGCAC
  CGGGGTGTGA TGCTGCCATG GGATGGGGGT TGAGCACCAG GAAGCCGATG CCCATGAGTC
  ATCTGTCCTA CAGTATAGAG GAGGGGAATG GGTCTCCTGG AAGTGACATT AGAATTGTGA
  CTATTCTGGA AGCTGTGGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49114629	NES12407667	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		G	G	G	C		G
ss324360230	CHEV_13_60132515	CHEVERUD	SCREENING_POP	f	SNP										C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30236603					SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49114629	NES12407667	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:60178968 () rs orientation: forward

Symbol	Name	Function Class
A530065N20Rik	RIKEN cDNA A530046M15 gene	within coordinates
Rr284562	regulatory region 284562	769 bp distal
Tssr120109	transcription start site region 120109	1525 bp downstream
Tssr120110	transcription start site region 120110	1461 bp downstream
Tssr120111	transcription start site region 120111	1445 bp downstream