rs30237213 SNP Detail

Summary

• ID
  rs30237213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121383473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAATGATGT CTCTGCAAGG TTGAGCTTGC TCAGCAGACC
  CAACAATGCA GATCTGTCGG TCCCCCTACG CCTTTCCTTT GTTCTTTCTT TAGTTGGTTT
  Y
  GGGACCGGAT CTTGTGTCAT GGTTGAGGCT GACCTCAATT CTGTAACTAG CCTAAGATGG
  CCTCAAACTC AGGATCCCCT CCTACCCCCT GCCTCGTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46928121	NES10667298	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	T	C	C		T	C	C		C
ss135724591	ENSMUSSNP2739056	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss320904043	CHEV_3_121292742	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30237213					SNP	C	C	C	C	C	C	T	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46928121	NES10667298	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121383473 () rs orientation: forward

Symbol	Name	Function Class
Gm33485	predicted gene, 33485	within coordinates
Gm65965	predicted gene, 65965	328 bp upstream
Rr584122	regulatory region 584122	within coordinates
Tssr1037	transcription start site region 1037	434 bp upstream