rs30237431 SNP Detail

Summary

• ID
  rs30237431
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:60177928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGTGCC CCGGAACAAA
  GGATTGGATG TCTAGCGAAA CGTGTCCACA GCAGTTCCAT TTTGTAAGGC TGCTATCAGA
  TCAAGCAAGA TAAAATGTGC TCAGTACTTG AAGGAGCAAC AATCTCTTCA ATATTATTAT
  TTCTTTCTCT TTGTCGCTCC CTGTTTCCCT CTGAGTGCCG TAAGCATGTG TGCTGTAAGC
  W
  TGTTTGTGCA GGTCGGCACA CCATGTGCTC ATAGAAGGGT ACAGGCTGAT GTTGGGATGT
  CTTCCTCTAT CATTGCCTAC CTCTAAAAAC AGTACATTTG CTTTTGTCAA TTGATTGATT
  GATTGGTTAA CTGATATTTA TTGAAGAGGG GTGGGCTGTG CCTCAGAAGG TCAGAGGATA
  ACTTCTGGGA ATCTGTTCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss49114639	NES12407761	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A	A	T
ss324360215	CHEV_13_60131475	CHEVERUD	SCREENING_POP	f	SNP							T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs30237431					SNP	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49114639	NES12407761	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:60177928 () rs orientation: forward

Symbol	Name	Function Class
A530065N20Rik	RIKEN cDNA A530046M15 gene	within coordinates
Rr284562	regulatory region 284562	within coordinates
Tssr120109	transcription start site region 120109	485 bp downstream
Tssr120110	transcription start site region 120110	421 bp downstream
Tssr120111	transcription start site region 120111	405 bp downstream