rs30237596 SNP Detail

Summary

• ID
  rs30237596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123622225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAGGTCC CAGTACTCTC
  ACTTATGGGC TTCTTGGGGT TTGAGTGAAG AGTGGGGCCG CAAGTCTCTG CCCTCACTTG
  TCTAGCTGCT CTGAGGTGCC AGTGGTCAGG ACTGCATGGG GAAATGAAGT AGGTGCCATG
  GGCTGTCTCA GCAGAGGCCA GAATGTACAG GATGTTCATG TGCCATGGGC AGAGTTCATT
  Y
  TCCAGCGCAC TATACCACCC AGGTTTCCCA GGAGCCTGTG GGAGGCTTGC ATGCTGCCCT
  TCACTTCTCT TTCTCTCTCT CCCCAGATCG AGGCTCAGTG AGACACTGAC AAGTAGCTAG
  AGCTGCAGCA GGAAAAACAA GGCTAGATTG ATCCTGACCC TTTCCTAACC CTGCCCCTCA
  CTGCTAAGTG ACTCCACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46387871	mCV23332178	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss137081825	ENSMUSSNP6452185	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323234343	CHEV_9_123702278	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30237596					SNP	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123622225 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	within coordinates
Tssr92157	transcription start site region 92157	1094 bp upstream
Tssr92158	transcription start site region 92158	1088 bp upstream
Tssr92159	transcription start site region 92159	1064 bp upstream
Tssr92160	transcription start site region 92160	689 bp upstream
Tssr92161	transcription start site region 92161	668 bp upstream
Tssr92162	transcription start site region 92162	1665 bp downstream