rs3023803 SNP Detail

Summary

• ID
  rs3023803
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79831001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACCCGGG GAAATTACAG
  GCAGTTTCAA TGAAAGAAAA CAAGGGGTTT TGTGGGGGTT TTGCCTCAAA AGTATTGGAG
  TACACTAGGC TTTAAAATAC TGCAGGCATT CTGAGGGACT AAGTTTGCTT TCCCACGACT
  CTCAGACTTC ACCCTCCTGT GCCCCGTGGG GAAACTGAGG CAAGCCAGAT GTGACCCCAA
  Y
  GCCTGCAGCC CTCCCTCACT CCTCTGGTGT TTGAAGGCTT CCCTGCCCCT GTGCAGGCCC
  TGATTAGGTG TGCTAGAGTC TGGGCCTCGG AAGGGGCCAC ACATGACCCA CACGGGCCCC
  TGCACTGCCA GAAAATGTGA AATTCCCTGT GTGGACCAAA AAAACAAAAA AAAAAACAAA
  AACAAAACAA AAACAAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
ss6391329	Z19543_29	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
rs3023803					SNP	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6391329	Z19543_29	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79831001 () rs orientation: forward

Symbol	Name	Function Class
Abca7	ATP-binding cassette, sub-family A member 7	1327 bp upstream
Cnn2	calponin 2	within coordinates
Cpgi1834	CpG island 1834	1217 bp proximal
Rr225140	regulatory region 225140	799 bp proximal
Rr402033	regulatory region 402033	1120 bp upstream
Tssr94446	transcription start site region 94446	309 bp downstream
Tssr94447	transcription start site region 94447	132 bp downstream
Tssr94448	transcription start site region 94448	77 bp downstream
Tssr94449	transcription start site region 94449	91 bp upstream
Tssr94450	transcription start site region 94450	1288 bp upstream
Tssr94451	transcription start site region 94451	1312 bp upstream
Tssr94452	transcription start site region 94452	1348 bp upstream
Tssr94453	transcription start site region 94453	1375 bp upstream
Tssr98373	transcription start site region 98373	152 bp downstream
Tssr98374	transcription start site region 98374	216 bp downstream