rs30238302 SNP Detail

Summary

• ID
  rs30238302
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40690577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTG GGGCCATAAG GAAAAGAACA
  K
  TCCTGAACTG AATTTGTTTA CATAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46388078	mCV23403812	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
ss136338032	ENSMUSSNP3215898	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss322919535	CHEV_9_40587364	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30238302					SNP	T	T	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40690577 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Gm16096	predicted gene 16096	1246 bp downstream
Rr676918	regulatory region 676918	1941 bp distal
Rr676919	regulatory region 676919	996 bp distal
Tssr84467	transcription start site region 84467	1053 bp upstream
Tssr84468	transcription start site region 84468	1795 bp upstream
Tssr84469	transcription start site region 84469	1847 bp upstream