rs3023831 SNP Detail

Summary

• ID
  rs3023831
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100307394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAACAAGA GTACTATAAA
  GGAGAGAGGA GAGCGGTCTG AGTGTCACCC GTCCTAACGT CTCTATTTTA TCACACATCA
  CGGAGCGACC CCAGTGGCAC AGGGCCAGGG TGGGCTCTGC GCGAGTCCCC ATTTCACATC
  CAGTTCGTCC ACTTTTTACC AATAAGATGG CCTCTTCTCT CAGTGGGAGT CCTTCCTTTA
  Y
  CTGCTCTCCA TAAGCAACTT GGTCCAAACT GAACCCACCC ACTTCCCACA TAGGAGCAAA
  ACCACACTTG AAAGAGAAGA ACACAGGGGC TAGAGAGATG GCTCAGCGGC TGAGAGCGCC
  AACTGCTCTT CCAGAGGTCC TGAGTTCAAT TCCCAGCAAC CACATGGTGA CTCACAACCA
  TCTGTAATGA GATCTGACGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16381747	C15.099.560	TWGNF	TWGNF-Mouse-2	f	SNP	C	C	T	T	C	C	T	T	T	T	T	T	C	T	C	T	T	T	T	C	T	C	C	C	T	C	T	T	C	C	C	C	C	C	T	T		C	C	C	T	T	C	T	T	C	T
ss48133913	NES12133131	PERLEGEN	MM_PANEL2	f	SNP	C			T	C	C		T						T					T					C					C				C				T									C
ss148475090	ENSMUSSNP4000025	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T																T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs3023831					SNP	C	C	T	T	C	C	T	T	T	T	T	T	C	T	C	T	T	T	T	C	T	C	C	C	T	C	T	T	C	C	C	C	C	C	T	T	T	C	C	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48133913	NES12133131	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100307394 () rs orientation: forward

Symbol	Name	Function Class
Rr509705	regulatory region 509705	1097 bp proximal
Slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	Intron
Tssr136419	transcription start site region 136419	646 bp downstream